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西亚试剂:A Mitochondrial Protein Compendium Elucidates Complex I Dis

A Mitochondrial Protein Compendium Elucidates Complex I Disease Biology
David J. Pagliarini,1,2,3,9 Sarah E. Calvo,1,2,3,4,9 Betty Chang,3 Sunil A. Sheth,1,2,3,4 Scott B. Vafai,1,2 Shao-En Ong,3 Geoffrey A. Walford,1,2 Canny Sugiana,5 Avihu Boneh,5,6 William K. Chen,1,2 David E. Hill,7 Marc Vidal,7 James G. Evans,8 David R. Thorburn,5,6 Steven A. Carr,3, and Vamsi K. Mootha1,2,3,

1 Center for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114, USA
2 Department of Systems Biology, Harvard Medical School, Boston, MA 02446, USA
3 Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA
4 Harvard-MIT Division of Health Sciences and Technology, Cambridge, MA 02139, USA
5 Murdoch Childrens Research Institute and Department of Paediatrics, University of Melbourne, Melbourne VIC 3052, Australia
6 Genetic Health Services Victoria, Royal Children's Hospital, Melbourne VIC 3052, Australia
7 Center for Cancer Systems Biology (CCSB) and Department of Cancer Biology, Dana-Farber Cancer Institute, and Department of Genetics, Harvard Medical School, Boston MA 02115, USA
8 Whitehead MIT BioImaging Center, Cambridge, MA 02139, USA

Summary

Mitochondria are complex organelles whose dysfunction underlies a broad spectrum of human diseases. Identifying all of the proteins resident in this organelle and understanding how they integrate into pathways represent major challenges in cell biology. Toward this goal, we performed mass spectrometry, GFP tagging, and machine learning to create a mitochondrial compendium of 1098 genes and their protein expression across 14 mouse tissues. We link poorly characterized proteins in this inventory to known mitochondrial pathways by virtue of shared evolutionary history. Using this approach, we predict 19 proteins to be important for the function of complex I (CI) of the electron transport chain. We validate a subset of these predictions using RNAi, including C8orf38, which we further show harbors an inherited mutation in a lethal, infantile CI deficiency. Our results have important implications for understanding CI function and pathogenesis and, more generally, illustrate how our compendium can serve as a foundation for systematic investigations of mitochondria.